Results of Complex Structure Prediction for Target Name: LCI1 ( Click )

Protein sequence

Predicted Top 1 Quaternary structure

Predicted Model 1

Model 1 vs Contact (Top L/10)

Note: No long-range contacts in the model!

Model 1 vs Contact (Top L/5)

./work_dimer/LCI1/LCI1A.L5.png

Model 1 vs Contact (Top L)

./work_dimer/LCI1/LCI1A.L.png

Model 1 vs Contact (Top 10)

./work_dimer/LCI1/LCI1A.T10.png

Model 1 vs Contact (Top 5)

./work_dimer/LCI1/LCI1A.T5.png

( Multiple Sequence Alignment file )

( Contact Map file in CASP RR Format )

</div> </td> </tr> </table> </div> </div>  </div>  <div style="background-color:white;" class="headedBox" > <h1><b>References</b> </h1> <p align="left"><text style="font-size: 1.2em;color:grey">[1] Quadir, F., Roy, R., Halfmann, R., & Cheng, J. (2021). DNCON2_Inter: Predicting interchain contacts for homodimeric and homomultimeric protein complexes using multiple sequence alignments of monomers and deep learning. Scientific Reports, (accepted). (https://doi.org/10.21203/rs.3.rs-228041/v1) </text> </p> <p align="left"><text style="font-size: 1.2em;color:grey">[2] Hou, J., Wu, T., Guo, Z., Quadir, F. & Cheng, J. The MULTICOM Protein Structure Prediction Server Empowered by Deep Learning and Contact Distance Prediction. in Methods in Molecular Biology vol. 2165 13–26 (Humana Press Inc., 2020) </text> </p> <p align="left"><text style="font-size: 1em;color:grey">[3] Soltanikazemi, E., Quadir, F., Roy, R. S. & Cheng, J. Distance-based Reconstruction of Protein Quaternary Structures from Inter-Chain Contacts. bioRxiv 2021.05.24.445503 (2021) doi:10.1101/2021.05.24.445503</text></p> <p align="left"><text style="font-size: 1em;color:grey">[4] Quadir, F., Roy Raj, Soltanikazemi, E. & Cheng, J. DeepComplex. https://github.com/jianlin-cheng/DeepComplex </text> </p> <p align="left"><text style="font-size: 1em;color:grey">[5] Hou, J., Wu, T., Cao, R., & Cheng, J. (2019). Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13. Proteins, accepted. (https://doi.org/10.1002/prot.25697)</text> </p> <p align="left"><text style="font-size: 1em;color:grey">[6] Li, J., Deng, X., Eickholt, J., & Cheng, J. (2013). Designing and benchmarking the MULTICOM protein structure prediction system. BMC structural biology, 13(1), 2.</text></p> <p align="left"><text style="font-size: 1em;color:grey">[7] Cheng, J., Li, J., Wang, Z., Eickholt, J., & Deng, X. (2012). The MULTICOM toolbox for protein structure prediction. BMC bioinformatics, 13(1), 65.</text></p> <p align="left"><text style="font-size: 1em;color:grey">[8] Wang, Z., Eickholt, J., & Cheng, J. (2010). MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8. Bioinformatics, 26(7), 882-888.</text></p> </div> <div class="footer"> <div align="center"> <p align="center" style="text-align:center"><a href="http://calla.rnet.missouri.edu/cheng/cheng_research.html">Dr. Jianlin Cheng's Bioinformatics, Data Mining, Machine Learning Laboratory (BDM) Laboratory</a>, <a href="http://www.cs.missouri.edu">Department of Computer Science</a>, <a href="http://www.missouri.edu/">University of Missouri-Columbia</a></p> <p align="center"> </p> </div> </div> </body> </html>